- CWEN : Francis Wenninger: Manuscripts
- CWEN 1/01 Folder : Notebook- General Pathology 1906
- CWEN 1/02 Folder : Notebook- Bacteriology 1910
- CWEN 1/03 Folder : Notebook- The Animals in Scripture 1922
- CWEN 1/04 Folder : Notebook- Paleontology
- CWEN 1/05 Folder : Notebook- "Mein Kampf" by Wenninger
- CWEN 1/06 Folder : Notebook- Evolution Bibliographies
- CWEN 1/07 Folder : Notebook- Cestodes
- CWEN 1/08 Folder : Notebook- Zoology
- CWEN 1/09 Folder : Notebook- Tiergeograpie
- CWEN 1/10 Folder : Notebook- Ethnology
- CWEN 1/11 Folder : Notebook- Ethnology
- CWEN 1/12 Folder : Notebook- Physics
- CWEN 1/13 Folder : Notebook- Race Suicide
- CWEN 1/14 Folder : Notebook- Scriptures
- CWEN 1/15 Folder : Notebook- Mammoth Cave
- CWEN 1/16 Folder : Notebook- Biology
- CWEN 1/17 Folder : Notes on General Pathology 1906
- CWEN 1/18 Folder : Notes on the Anthology of Man
- CWEN 1/19 Folder : "The American Catholic Quarterly Review" 1877/10
- CWEN 1/20 Folder : Explanatory Index to Accompany White's Physiological Manikin
- CWEN 1/21 Folder : University of Notre Dame 49th Commencement Exercises (invitation) 1893
- CWEN 1/22 Folder : Article- "The Economic Value of birds" by F.J. Wenninger- in the American Midland Naturalist 1909/12
- CWEN 1/23 Folder : Scrapbook 1909
- CWEN 1/24 Folder : "The American Midland Naturalist" 1911/05
- CWEN 1/25 Folder : Pamphlet-"Der Priefter" 1916
- CWEN 1/26 Folder : "St. Mary's Chimes" (includes Fr. Wenninger's Baccalaureate Sermon) 1919/06
- CWEN 1/27 Folder : Pamphlet-"Fr. Zahm" by John Cavanaugh 1922
- CWEN 1/28 Folder : "The Catalyzer"-Chemists' Club Magazine 1926/12
- CWEN 1/29 Folder : Newspaper Articles
- CWEN 1/30 Folder : Pamphlet-"Randbemerkungen" 1931
- CWEN 1/31 Folder : Article in the Notre Dame Alumnus- "The World of Insects" by F.J. Wenninger 1932/02-03
- CWEN 1/32 Folder : Article in the Notre Dame Alumnus- "The Relation of Religion and Science" by F.J. Wenninger 1936/03
- CWEN 1/33 Folder : "The Nervous System" (typed notes) 1937/0415
- CWEN 1/34 Folder : "Reproduction Among Mammals" (typed notes) 1937/1006
- CWEN 1/35 Folder : Pamphlet- "The Pathways of Absorption of Sodium Ferrocyanide from the Subarachnoid Space into the Venous System" by R.O. Scholz and E.M. Ralston 1939
- CWEN 1/36 Folder : Article- "Ape" by F.J. Wenninger
- CWEN 1/37 Folder : Pamphlet- "Monographie des Coquilles Bivalves et Fluviatiles"
- CWEN 1/38 Folder : Pamphlet- "Rev. Francis J. Wenninger, CSC, 1888-1940"
- CWEN 1/39 Folder : "The Teaching of Science" and notes
- CWEN 1/40 Folder : "The New Biblical Atlas and Scripture Gazatteer"
- CWEN 1/41 Folder : Pamphlet-"Poverty and Crime" by F.J. Wenninger
- CWEN 1/42 Folder : "The Catholic Catechism" - Part Three
- CWEN 1/43 Folder : Study of Philosophy in German
- CWEN 1/44 Folder : Pictures of bugs and their anatomy
- CWEN 1/45 Folder : Pamphlet-"The Human Body" by W. Furneaux
- CWEN 1/46 Folder : Pocket Map of Greater South Bend and Miskawaka
- CWEN 1/47 Folder : Pamphlet-"The Mysteries of Free Masonry" by George R. Crafts
- CWEN 1/48 Folder : Pamphlet-"The Biological Control of Insects" by Harvey L. Sweetman
- CWEN 1/49 Folder : Pamphlet-"Insect Enemies of Shade Trees" by Glenn W. Herrick
- CWEN 1/50 Folder : "The Roman Pronunciation of Latin" by John B. Sheier
- CWEN 1/51 Folder : Guide to Church of the Sacred Heart
- CWEN 1/52 Folder : "The Anatomy of Stenobothrium Macrobothrium, Diesing" by F.J. Wenninger
- CWEN 2/01 Folder : The Salt Lake Tribune 1871/0415
- CWEN 2/02 Folder : Notre Dame Scholastic 1875/1106
- CWEN 2/03 Folder : Notre Dame Scholastic 1876/0415
- CWEN 2/04 Folder : Notre Dame Scholastic 1877/1125
- CWEN 2/05 Folder : Notre Dame Scholastic 1877/0203
- CWEN 2/06 Folder : Notre Dame Scholastic 1877/0210
- CWEN 2/07 Folder : Notre Dame Scholastic 1877/0217
- CWEN 2/08 Folder : Notre Dame Scholastic 1877/0303
- CWEN 2/09 Folder : Notre Dame Scholastic 1877/0324
- CWEN 2/10 Folder : Notre Dame Scholastic 1877/0331
- CWEN 2/11 Folder : Notre Dame Scholastic 1877/1027
- CWEN 2/12 Folder : Notre Dame Scholastic 1880/0306
- CWEN 2/13 Folder : Notre Dame Scholastic 1880/0424
- CWEN 2/14 Folder : Notre Dame Scholastic 1880/0515
- CWEN 2/15 Folder : Notre Dame Scholastic 1880/0522
- CWEN 2/16 Folder : Notre Dame Scholastic 1880/0529
- CWEN 2/17 Folder : Notre Dame Scholastic 1880/0605
- CWEN 2/18 Folder : Notre Dame Scholastic 1880/0612
- CWEN 2/19 Folder : Notre Dame Scholastic 1880/0619
- CWEN 2/20 Folder : The Ave Maria 1881/0611
- CWEN 2/21 Folder : The Ave Maria 1881/0618
- CWEN 2/22 Folder : Notre Dame Scholastic 1883/1215
- CWEN 2/23 Folder : Notre Dame Scholastic 1883/1219
- CWEN 2/24 Folder : Notre Dame Scholastic 1884/0112
- CWEN 2/25 Folder : Miscellaneous pages from Notre Dame Scholastic
- CWEN 2/26 Folder : Notebook- Geology and Paleontology 1884
- CWEN 2/27 Folder : Notre Dame Scholastic 1885/0117
- CWEN 2/28 Folder : Parts of Notre Dame Scholastic 1885/0418
- CWEN 2/29 Folder : Notre Dame Scholastic 1886/0123
- CWEN 2/30 Folder : Notre Dame Scholastic 1886/0130
- CWEN 2/31 Folder : Notre Dame Scholastic 1887/0129
- CWEN 2/32 Folder : Notre Dame Scholastic 1887/0205
- CWEN 2/33 Folder : Notre Dame Scholastic 1887/0212
- CWEN 2/34 Folder : Pamphlet- "Biological Laboratory" 1892
- CWEN 2/35 Folder : Pamphlet- "Das Ehrenkreuz" 1904
- CWEN 2/36 Folder : Pamphlet- "Souvenir of South Bend" 1905
- CWEN 2/37 Folder : Pamphlet- "Glestcher-Garten Luzern" 1908
- CWEN 2/38 Folder : Pamphlet- "Guide to the Ecclesiastical Treasury of the Imperial House"- Vienna 1910
- CWEN 2/39 Folder : The Daily Chicago Tribune 1911/0310
- CWEN 2/40 Folder : Notre Dame Scholastic 1912/0427
- CWEN 2/41 Folder : Pamphlet-"Subterranean Wonders" 1913
- CWEN 2/42 Folder : "A Biological Study of Miranda Aurantia"- Master's Thesis by F.J. Wenninger 1917
- CWEN 2/43 Folder : A Laboratory Course in Zoology Bases on Hegner's Zoology- Prepared by F.J. Wenninger 1917
- CWEN 2/44 Folder : Correspondence 1917-1940
- CWEN 2/45 Folder : Letter of satisfactory credentials for Wenninger's Doctorate of Philosophy 1918
- CWEN 2/46 Folder : Pamphlet-Trier (Treves) and its Curiosities" 1919